rs6218263 SNP Detail

Summary

• ID
  rs6218263
• Variation Type
  SNP
• Alleles
  A/G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48694456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCT TTGGCTTCTT ATGGTTCATC
  D
  CAATACTTTA GGACTGTGGT TTGTT                                      
  
  D = A/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss8623940	WI_WGS_11_49163092	WI	MOUSE	f	SNP							G		T
ss37219188	NES08451699	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G		G		G	G	A		G		G
ss323664627	CHEV_11_48617131	CHEVERUD	SCREENING_POP	f	SNP													A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs6218263					SNP	G	G	A	G	G	G	G	G	T	G	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37219188	NES08451699	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48694456 () rs orientation: forward

Symbol	Name	Function Class
Rack1	receptor for activated C kinase 1	within coordinates
Rr246622	regulatory region 246622	455 bp distal
Snord95	small nucleolar RNA, C/D box 95	423 bp downstream
Snord96a	small nucleolar RNA, C/D box 96A	1520 bp downstream
Tssr101142	transcription start site region 101142	1820 bp downstream
Tssr101143	transcription start site region 101143	1333 bp downstream
Tssr101144	transcription start site region 101144	1277 bp downstream
Tssr101145	transcription start site region 101145	180 bp downstream
Tssr107636	transcription start site region 107636	1954 bp downstream