rs6218362 SNP Detail

Summary

• ID
  rs6218362
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:139336979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGTCCAGA GATGCCTGGA
  CACCAGAACA CTTAACTCAC CCAGGCAACT CTGGGGTCTT CGCTGAAGCC ATGGGGACTC
  TCATGCTGGC ATGGGAGTTC GTGCCTGCTC CCGGAGGGGC TGCAGACTCC AGCCCTGATC
  ATCCTGACAG TCTCCTGTCC CACCCTGCCT GGCTTTTCTA CACCTACCTC CACATCCCAT
  Y
  CATTGTCCCT GATGGCCAGG CAAATCTCAG CTCACCAGCT ACCGTGCAGA CACCACAGCA
  CACCATCTGC CTTGACTTCC TCCTTTCCAA TACAAGCAAA CGGAGCCACA CCAATCCTCC
  CCTGGGATTG TGACATCAGA GTCCTGTTGG TCCCTCTGCC TCTGATTTCC ATAGCCCTCG
  CTCCTGGCCA AGTCTGGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8624040	WI_WGS_5_138240911	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6218362					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:139336979 () rs orientation: forward

Symbol	Name	Function Class
Cyp2w1	cytochrome P450, family 2, subfamily w, polypeptide 1	1393 bp upstream
Rr623253	regulatory region 623253	1098 bp distal
Rr623254	regulatory region 623254	within coordinates
Rr623255	regulatory region 623255	184 bp proximal
Rr623256	regulatory region 623256	903 bp proximal
Tssr49499	transcription start site region 49499	1383 bp upstream