rs6218547 SNP Detail

Summary

• ID
  rs6218547
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:4948673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCATAAT TCACATTGCA
  TCCTTATATT TTTGAATAGT TGAGAAATTA TATACCCTTG AATTCGTGTT TTTAGAATTT
  TCTTTTCCAC CGCCTTAAGG GCTGTCCTGA AGGCCCCAGC ATTTAACATT TTGCTAGAAC
  ATTAGCCACA CCTTTGACTC CCAGTTTCTT ATTACCTTAA CAAGAGTATA TTCCTCAGAG
  R
  AATGTGAAAC ACATTATTGT ACAAACAAGC CTTACACCCA ATGTAGCCAT CCTCATTCAT
  ATCTGGGCCC TGTCCCAGGG GCAGGAACCA TGACATTCTG TCCCCACCAA GACCTTGCTG
  GGCTAGGCAC TTTATCTTTG CACACTCATG AGGATATCCT CCACTAATGA TTACTTTAAT
  AGCCCACTTT CTTTTCTATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8624225	WI_WGS_12_4788886	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6218547					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4948673 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr386810	regulatory region 386810			within coordinates
Ubxn2a	UBX domain protein 2A			Intron
				Noncoding-Transcript-Variant