rs6219073 SNP Detail

Summary

• ID
  rs6219073
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:130065579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CTTCCTCCTC
  CACTCTGTGG AAGAAAACCC AATGTCCTCC TAGGCCATCT ACCAACCGCT ACATGACCCT
  GTTTTATGCT ACAACTTCCC CAGCATCACC TTCAATACAC ACTTTAAAAA GGAGGCCCCC
  ACTGTATTTC TATGGTCTTC AGAGCAAACC ACCAATCAGT GAAGCAGACA AGAGTGATGG
  TCTCAGTGGA GAGCAGTCTG ATCCTCCGTA GCTCCACACT ACCACTGAAG AAGTATCAAC
  R
  GNCTTCACTA AAGAGACTGT TGACAACTAT TTTTTTTNAA AGGAAATGGC AAAACATCCT
  TAAATCTCAC AACAGTGATT GCATAGTCCA TATCAGCATA GAGGAGGCTA TGGTCCTTCT
  CACTGCAGAA AGAACTCTTT ATGAGCGAGC AAAATTGTCT CCTTAATAAT CCATGCCCAC
  ATGGACTACC TACACGCCAA GTGGTGTGCC CCAAGATGCA CATTGTACTG AAAATTCATC
  TTCTGTAATG                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8624755	WI_WGS_7_120401047	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6219073					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:130065579 () rs orientation: forward

Symbol	Name	Function Class
Ate1	arginyltransferase 1	within coordinates
Tssr75149	transcription start site region 75149	1144 bp upstream
Tssr75150	transcription start site region 75150	4 bp upstream