rs6219075 SNP Detail

Summary

• ID
  rs6219075
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:130065581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCGCTAC ATGACCCTGT
  TTTATGCTAC AACTTCCCCA GCATCACCTT CAATACACAC TTTAAAAAGG AGGCCCCCAC
  TGTATTTCTA TGGTCTTCAG AGCAAACCAC CAATCAGTGA AGCAGACAAG AGTGATGGTC
  TCAGTGGAGA GCAGTCTGAT CCTCCGTAGC TCCACACTAC CACTGAAGAA GTATCAACGG
  Y
  CTTCACTAAA GAGACTGTTG ACAACTATTT TTTTTTAAAG GAAATGGCAA AACATCCTTA
  AATCTCACAA CAGTGATTGC ATAGTCCATA TCAGCATAGA GGAGGCTATG GTCCTTCTCA
  CTGCAGAAAG AACTCTTTAT GAGCGAGCAA AATTGTCTCC TTAATAATCC ATGCCCACAT
  GGACTACCTA CACGCCAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss8624757	WI_WGS_7_120401049	WI	MOUSE	f	SNP							T		C
ss50471525	NES14118775	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T		T		C			T	T	T	T	T
ss61062776	NES16064256	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C		T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs6219075					SNP	T	T	T	T	T	T	T	C	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50471525	NES14118775	PERLEGEN	MM_PANEL	f	SNP	C/T
ss61062776	NES16064256	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:130065581 () rs orientation: forward

Symbol	Name	Function Class
Ate1	arginyltransferase 1	within coordinates
Tssr75149	transcription start site region 75149	1146 bp upstream
Tssr75150	transcription start site region 75150	6 bp upstream