rs6219076 SNP Detail

Summary

• ID
  rs6219076
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:40081521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATGA GGAATATATG CTGTTAGAAA
  Y
  ATCTAATCCC TTTATTCAAT CACTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	NZW/LacJ	PWD/PhJ	SM/J
ss8624758	WI_WGS_8_38751554	WI	MOUSE	f	SNP		C	T
ss46213180	mCV25306822	ABI	CRAMUS_MOUSE	f	SNP	T	C		T
ss47476753	NES11459216	PERLEGEN	MM_PANEL2	f	SNP						T	C
ss144620635	ENSMUSSNP5508395	ENSEMBL	ENSEMBL_Sanger	f	SNP	T			T
ss322624615	CHEV_8_40713834	CHEVERUD	SCREENING_POP	f	SNP					T			T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	NZW/LacJ	PWD/PhJ	SM/J
rs6219076					SNP	T	C	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47476753	NES11459216	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:40081521 () rs orientation: forward

Symbol	Name	Function Class
Msr1	macrophage scavenger receptor 1	within coordinates
Tssr81026	transcription start site region 81026	765 bp downstream
Tssr81027	transcription start site region 81027	868 bp downstream
Tssr81028	transcription start site region 81028	918 bp downstream
Tssr81029	transcription start site region 81029	1037 bp downstream
Tssr81030	transcription start site region 81030	1159 bp downstream
Tssr81031	transcription start site region 81031	1853 bp downstream