rs6219077 SNP Detail

Summary

• ID
  rs6219077
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:40081522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGAG GAATATATGC TGTTAGAAAC
  R
  TCTAATCCCT TTATTCAATC ACTGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
ss8624759	WI_WGS_8_38751555	WI	MOUSE	f	SNP						A		G
ss46231100	mCV25306829	ABI	CRAMUS_MOUSE	f	SNP		G				A			G
ss47476756	NES11459217	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G		G		G	G	G		A		G
ss144620641	ENSMUSSNP6229032	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
ss322624616	CHEV_8_40713835	CHEVERUD	SCREENING_POP	f	SNP												G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
rs6219077					SNP	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47476756	NES11459217	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:40081522 () rs orientation: forward

Symbol	Name	Function Class
Msr1	macrophage scavenger receptor 1	within coordinates
Tssr81026	transcription start site region 81026	764 bp downstream
Tssr81027	transcription start site region 81027	867 bp downstream
Tssr81028	transcription start site region 81028	917 bp downstream
Tssr81029	transcription start site region 81029	1036 bp downstream
Tssr81030	transcription start site region 81030	1158 bp downstream
Tssr81031	transcription start site region 81031	1852 bp downstream