rs6219110 SNP Detail

Summary

• ID
  rs6219110
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51340691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGTAGAA CAGACTGGAT
  TTGAACTCAG AGATCTGCCT GCCTCTGCCT CCTGAGTTCT GGGATTAAAG GTGTGTACCA
  CCAATGCTTG GCTATTTTTT AATTTTTAAA AGTACACTTT ATTTATTTAT TTAGTGAGTG
  TGTATGTCCA TCCATGTGGG TTTACATAAA AGAACTTTTG GGAGTAAATT CTTTCCTTCC
  R
  TCATACTGGT CCAACTTAGG CTGTCAGATG TGACAGTGGG TATAAACTAC CTGCCCAACC
  ATCTCACTGA CTGAAGATTT ATTTTCAAAT TTTAGTAAAG GTAGATCTGA ATCTTCTCCC
  AGGGAATGGG CAGTCTGGGT CTATGCCAGA GCCACTAGCG TTAACGAATT TTTTTTTTTC
  TCTAGGTGTT TAGTGCCTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8624792	WI_WGS_3_51870730	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6219110					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51340691 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Naa15	N(alpha)-acetyltransferase 15, NatA auxiliary subunit			Intron
				Noncoding-Transcript-Variant
Rr576318	regulatory region 576318			814 bp proximal
Rr576319	regulatory region 576319			1241 bp proximal
Rr576320	regulatory region 576320			1714 bp proximal