rs6219143 SNP Detail

Summary

• ID
  rs6219143
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:130065617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGCATCA CCTTCAATAC
  ACACTTTAAA AAGGAGGCCC CCACTGTATT TCTATGGTCT TCAGAGCAAA CCACCAATCA
  GTGAAGCAGA CAAGAGTGAT GGTCTCAGTG GAGAGCAGTC TGATCCTCCG TAGCTCCACA
  CTACCACTGA AGAAGTATCA ACGGTCTTCA CTAAAGAGAC TGTTGACAAC TATTTTTTTT
  W
  AAAGGAAATG GCAAAACATC CTTAAATCTC ACAACAGTGA TTGCATAGTC CATATCAGCA
  TAGAGGAGGC TATGGTCCTT CTCACTGCAG AAAGAACTCT TTATGAGCGA GCAAAATTGT
  CTCCTTAATA ATCCATGCCC ACATGGACTA CCTACACGCC AAGTGGTGTG CCCCAAGATG
  CACATTGTAC TGAAAATTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8624825	WI_WGS_7_120401085	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6219143					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:130065617 () rs orientation: forward

Symbol	Name	Function Class
Ate1	arginyltransferase 1	within coordinates
Tssr75149	transcription start site region 75149	1182 bp upstream
Tssr75150	transcription start site region 75150	42 bp upstream