rs6219250 SNP Detail

Summary

• ID
  rs6219250
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48694587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATAGTGAT GCATTCTGAT
  TTGGAATATT TATGAACATT AGTTTGGCTT TGGCTTCTTA TGGTTCATCG CAATACTTTA
  GGACTGTGGT TTGTTGAGGC TAGGATTCAT TCTGTATCCC TTTACTGACC TGTGTCATCC
  AAGCACAGGT ACTGTGACCT GTCTTGGTCA CCCAGGTACT GGAACTATAG AGGCTTGCAT
  R
  ACATGCCTGT TCAGTGGTCC CTTAAAAGTG GTGTTCATAC CTTTCCTGTT TAGTGTATAC
  CTTTATCCTG GTCACCCACA GACTCCTGTT TTTTCAGGTG TGGAATCTGG CTAACTGCAA
  GCTAAAGACC AACCACATTG GCCACACTGG CTACCTGAAC ACAGTGACTG TCTCTCCAGA
  TGGATCCCTC TGTGCTTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8624932	WI_WGS_11_49163223	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6219250					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48694587 () rs orientation: forward

Symbol	Name	Function Class
Rack1	receptor for activated C kinase 1	within coordinates
Rr246622	regulatory region 246622	586 bp distal
Snord95	small nucleolar RNA, C/D box 95	554 bp downstream
Snord96a	small nucleolar RNA, C/D box 96A	1651 bp downstream
Tssr101142	transcription start site region 101142	1951 bp downstream
Tssr101143	transcription start site region 101143	1464 bp downstream
Tssr101144	transcription start site region 101144	1408 bp downstream
Tssr101145	transcription start site region 101145	311 bp downstream
Tssr107636	transcription start site region 107636	1823 bp downstream