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rs6219263 SNP Detail
Summary
  • ID
    rs6219263
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr12:12582877 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TGTGC ACATGTGCAT GTGGGTGTGG
    W
    ATATGCATAG TTCCATGTAA AGCCA                                      
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
C3H/HeJ
C57BL/6J
LG/J
SM/J
ss8624946 WI_WGS_12_12625709 WI MOUSE f SNP A T
ss323899597 CHEV_12_12539682 CHEVERUD SCREENING_POP f SNP T A
SNP Consensus Information
SNP Consensus Type
C3H/HeJ
C57BL/6J
LG/J
SM/J
rs6219263 SNP A T T A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:12582877 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr266588 regulatory region 266588 1078 bp distal
Rr266589 regulatory region 266589 1725 bp proximal
Rr386869 regulatory region 386869 1252 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory