rs6219315 SNP Detail

Summary

• ID
  rs6219315
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48694632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTTGGCT TCTTATGGTT
  CATCGCAATA CTTTAGGACT GTGGTTTGTT GAGGCTAGGA TTCATTCTGT ATCCCTTTAC
  TGACCTGTGT CATCCAAGCA CAGGTACTGT GACCTGTCTT GGTCACCCAG GTACTGGAAC
  TATAGAGGCT TGCATGACAT GCCTGTTCAG TGGTCCCTTA AAAGTGGTGT TCATACCTTT
  Y
  CTGTTTAGTG TATACCTTTA TCCTGGTCAC CCACAGACTC CTGTTTTTTC AGGTGTGGAA
  TCTGGCTAAC TGCAAGCTAA AGACCAACCA CATTGGCCAC ACTGGCTACC TGAACACAGT
  GACTGTCTCT CCAGATGGAT CCCTCTGTGC TTCTGGAGGC AAGGTATTTG GGTTTTGTCA
  TCTTTACAGA GAAAGCTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8624998	WI_WGS_11_49163268	WI	MOUSE	f	SNP							C		T
ss37219186	NES08451665	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6219315					SNP	C	C	C	C	C	C	C	C	T	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37219186	NES08451665	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48694632 () rs orientation: forward

Symbol	Name	Function Class
Rack1	receptor for activated C kinase 1	within coordinates
Rr246622	regulatory region 246622	631 bp distal
Snord95	small nucleolar RNA, C/D box 95	599 bp downstream
Snord96a	small nucleolar RNA, C/D box 96A	1696 bp downstream
Tssr101142	transcription start site region 101142	1996 bp downstream
Tssr101143	transcription start site region 101143	1509 bp downstream
Tssr101144	transcription start site region 101144	1453 bp downstream
Tssr101145	transcription start site region 101145	356 bp downstream
Tssr107636	transcription start site region 107636	1778 bp downstream