rs6219572 SNP Detail

Summary

• ID
  rs6219572
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:160606347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGTCTTGT CCCCTTACCA
  TATTTCCCTT CAGGTAGTGG TTTCTTCTCA GTGGAGTAGA TTTAAGGATC AGTTTCATTA
  CTTAAATCCC CCAGGTAAAC CTGACTACTG TTGAGTGATC CAGGAGACCC ATCTTGGTGC
  CCCGTGGCTG TCTTGCCTGA TTCATCCAGT GTGTCCCTAC ATGTGACAGC TTGGTTAACA
  Y
  TGCTTTGCAC CCATTGGGTT ATGACCTGTA GAATCTCAGC CAAGCATTGT TTAAAAACAC
  CCTCAGGTAC ATCTGAGAAA TACTGTTGTC AGGGCTTTGC TCCCTGGAGC ATGAAAATGA
  GAAGTCAGGT TGAGAACCAT TATCTTTGGC AGAGGAAACC AAAAGAGTGG GGTTGGAAGG
  GAAGGCAGTG ATAACAGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8625258	WI_WGS_2_161653623	WI	MOUSE	f	SNP						C	T
ss37532479	NES08872694	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C			C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6219572					SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37532479	NES08872694	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:160606347 () rs orientation: forward

Symbol	Name	Function Class
Plcg1	phospholipase C, gamma 1	Intron
Rr569070	regulatory region 569070	1854 bp proximal