rs6219634 SNP Detail

Summary

• ID
  rs6219634
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51340780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTATTTTT TAATTTTTAA
  AAGTACACTT TATTTATTTA TTTAGTGAGT GTGTATGTCC ATCCATGTGG GTTTACATAA
  AAGAACTTTT GGGAGTAAAT TCTTTCCTTC CGTCATACTG GTCCAACTTA GGCTGTCAGA
  TGTGACAGTG GGTATAAACT ACCTGCCCAA CCATCTCACT GACTGAAGAT TTATTTTCAA
  R
  TTTTAGTAAA GGTAGATCTG AATCTTCTCC CAGGGAATGG GCAGTCTGGG TCTATGCCAG
  AGCCACTAGC GTTAACGAAT TTTTTTTTTT CTCTAGGTGT TTAGTGCCTG AGCACCTGTA
  GGCTTGTGCT GCTCTGTAGC TGTTCTGGGT TAAGTCAAGT CTGGTGTGGG CCTTCCCCAG
  TTTAATCTTT TTTTGTTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8625320	WI_WGS_3_51870819	WI	MOUSE	f	SNP	A	G
ss49598131	NES12917456	PERLEGEN	MM_PANEL2	f	SNP			A	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6219634					SNP	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49598131	NES12917456	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51340780 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Naa15	N(alpha)-acetyltransferase 15, NatA auxiliary subunit			Intron
				Noncoding-Transcript-Variant
Rr576318	regulatory region 576318			725 bp proximal
Rr576319	regulatory region 576319			1152 bp proximal
Rr576320	regulatory region 576320			1625 bp proximal