rs6219825 SNP Detail

Summary

• ID
  rs6219825
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:12582983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCACC TCCACCCACA CCCCTCTGAT
  Y
  TCAAACCAAA AGAGAACTTT GCAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	C57BL/6J	LG/J	SM/J
ss8625512	WI_WGS_12_12625815	WI	MOUSE	f	SNP		T	C
ss137142563	ENSMUSSNP5469640	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss323899599	CHEV_12_12539788	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	C57BL/6J	LG/J	SM/J
rs6219825					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:12582983 () rs orientation: forward

Symbol	Name	Function Class
Rr266588	regulatory region 266588	1184 bp distal
Rr266589	regulatory region 266589	1619 bp proximal
Rr386869	regulatory region 386869	1358 bp downstream