rs6219850 SNP Detail

Summary

• ID
  rs6219850
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166838302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGGGCTCA GAAGAAGGGG
  GAGCGCACAC AGACGCGACG ACAGCCAGCG CAAACGCTGA AGAGCGGCTC GGGGCCCGCA
  GCCTGGCAGG AAGTGACGGG GGAGGGGCCG CGCCCGCCCC CGGCCCCCGC CCGCCTCCAT
  GCCGGCCCCA CCCCCTACAC ACCGCGGCAG GAACCACAAG TCCCAGCGGG CGCCGCGTCC
  S
  GCATGCGCTC TCTAGGCACG CAAGGCCCAC AAGGGCCGGG CACGGCTGCG CTGGGTCCGA
  GGCATGTTGG GAGTTGTAGT TTCCCAGGAG CTCGGTCTCG GCAGGGAATA CAGGCCTCGC
  TTCCTTTCTT TTCTAGGCTT TCTGTTCCCT TCCTACAGTC ACCCCTTTTT CCCTACGCTA
  ACTTTTGTTA ACCTGCTGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8625537	WI_WGS_2_167965115	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6219850					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166838302 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12728	CpG island 12728	within coordinates
Rr40642	regulatory region 40642	1099 bp proximal
Rr56101	regulatory region 56101	within coordinates
Rr397498	regulatory region 397498	within coordinates
Stau1	staufen double-stranded RNA binding protein 1	83 bp upstream
Tssr27718	transcription start site region 27718	273 bp upstream
Tssr27719	transcription start site region 27719	224 bp upstream
Tssr27720	transcription start site region 27720	162 bp upstream
Tssr27721	transcription start site region 27721	126 bp upstream
Tssr27722	transcription start site region 27722	99 bp upstream