rs6219888 SNP Detail

Summary

• ID
  rs6219888
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:193905985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CATTATTTCC
  GTTTTAAAGA TGAAGCTATG ATCACTCATA ACTTAAGTTT CTTGAGCACA AATCACAATA
  TCTCCCCTTC AAGTCAACCA TTTGCTGACC TCAGGAAAAT ATGTGGGCAT TTAGAGACTT
  AAAAGAGACG TATCTAGTCC ATCCTACATC TGAGTTTTTG CTGGAAAATC AGGCCAGTGT
  TTGGAGCTGA ATTTACATAA ATAGCTTTGA GTTATGAGCA AGTTTATTCT ACCTGAAAAT
  Y
  TATCTCCAAA ATTCTCTGTC AATGGACAAA TCAAAGGGTC TGTGTGAAGG TCTCAGAAAG
  AATTGCCATG AGCCAACTAT GGAGAGGAGG GGCTGAGTCC AGCAGCTGGG TTGATGAGGC
  ACCTGGGAAT ACAGGAGAGG AGAGGGTATC AGAACAGGAC TTGTAAGAAG AAATTAAGCC
  AGATATAACG GCGATGTGAA GTCACTGGGC ACATCTAAAG TTCCTGCTTT AAATATTCAG
  CAGTCTTTGG                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8625575	WI_WGS_1_195755766	WI	MOUSE	f	SNP							T		C
ss60365283	NES15865014	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		T		T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6219888					SNP	T	T	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60365283	NES15865014	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:193905985 () rs orientation: forward

Symbol	Name	Function Class
4930503O07Rik	RIKEN cDNA 4930503O07 gene	918 bp upstream
Rr426624	regulatory region 426624	556 bp distal
Rr426625	regulatory region 426625	152 bp distal
Rr426626	regulatory region 426626	501 bp distal
Rr426627	regulatory region 426627	375 bp distal
Rr426628	regulatory region 426628	102 bp proximal