rs6219917 SNP Detail

Summary

• ID
  rs6219917
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36897860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTAGGTG GTGTGACAAC
  TTCCCTGGGC TTCATTATTC CCTAGGGGAA TACAAAGCAG TCAGGCTCTA TTTGCTTAAT
  AACCATCACA ATAGCTACCT TTCTGGTCAA AGAAAACTGA AACTAAGATT TATCACTGTT
  TATCCTCCAC TGTGGTACTG GCTGCATTAG CACGTCTGGA ATTCACCTTT AATCCCAGCA
  W
  TTGAGAGGCA CAGTTAGGTA TATCATTGAG TTTGACACCA GCCTAATTTA CAAAGTTAAG
  TCCAGGACAG CCTGGGCTAT TACAAAGAGA AACCCGGTCT CGGAAAAAAC GAACTAACAA
  ACAAACAAAA AACCACCCAA AACTAGTAAG ACAAGTGACT TAAATATAGG TAAGTAGTGG
  TAGTAGCATT AATATGGCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8625604	WI_WGS_18_36952080	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6219917					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36897860 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9876	CpG island 9876	261 bp proximal
Dnd1	DND microRNA-mediated repression inhibitor 1	within coordinates
Hars1	histidyl-tRNA synthetase 1	1721 bp downstream
Rr352751	regulatory region 352751	140 bp proximal
Tssr152972	transcription start site region 152972	1385 bp downstream
Tssr152973	transcription start site region 152973	1411 bp downstream
Wdr55	WD repeat domain 55	1099 bp downstream