rs6219999 SNP Detail

Summary

• ID
  rs6219999
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129469972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCCACCA TGTGGTTGCT
  GGGATTTGAA CTCCTGACCT TCGGAAGAGC AGTCGGGTGC TCTTACCCAC TGAGCCATCT
  CACCAGGCCC TGGGTTTTTT TCTTAATTTG TTTGTTTGCT TATTTTTGGA TTTTTGGAGA
  CAGGGTCTCT TTCTAGGTGG TCCTTACTGA CCTAGAACTC GCTCTGTAGA GCAGACTGGC
  R
  TCAAGATCAT AGAGATCTGT CTCATAGTGG CCTGATTTTC CCACTATGTG TCTAATAGAG
  TTAAATAGGG GAAGCCGGGC AGAGTGGTGC ACACCTTTAA CCCCAGCACT CCGGAGGCAA
  GTGAATCTCT GTGAGTTCAA GGCCAGTATG GGCTTCAGGA CAGTCGGAGC TACCTAGTGA
  GACCCTGCAT CAGGGAAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8625687	WI_WGS_4_127079488	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6219999					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129469972 () rs orientation: forward

Symbol	Name	Function Class
Fam167b	family with sequence similarity 167, member B	636 bp downstream
Gm68905	predicted gene, 68905	786 bp upstream
Rr367705	regulatory region 367705	694 bp downstream
Rr600278	regulatory region 600278	797 bp distal
Rr600279	regulatory region 600279	333 bp distal
Rr600280	regulatory region 600280	220 bp distal
Rr600281	regulatory region 600281	882 bp proximal
Rr600282	regulatory region 600282	1119 bp proximal
Tssr39178	transcription start site region 39178	528 bp downstream
Tssr43528	transcription start site region 43528	978 bp upstream
Tssr43529	transcription start site region 43529	882 bp upstream
Tssr43530	transcription start site region 43530	827 bp upstream
Tssr43531	transcription start site region 43531	778 bp upstream