rs6221021 SNP Detail

Summary

• ID
  rs6221021
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166838556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCCGAGGC ATGTTGGGAG
  TTGTAGTTTC CCAGGAGCTC GGTCTCGGCA GGGAATACAG GCCTCGCTTC CTTTCTTTTC
  TAGGCTTTCT GTTCCCTTCC TACAGTCACC CCTTTTTCCC TACGCTAACT TTTGTTAACC
  TGCTGCTGCG TGCAAGACCG AAAGCTGAGA ATACAGTGAG AATGCACAAG TCCCTGCCCT
  Y
  ATGGAGTTTA CTGGGGAAGT CAGAGTAAAT GAAGTCTGAG CCGAAAACAG ACAAGCACAA
  GTGCTGTCTG GTTCCTTTCC CGCAGCTCTA AACTGAGTGT GGTTCTGTGG ACAAGAGGCT
  GGTGTGGGCT TGTTTAGTGT AGTCCTGGGG ATTGAAGCAA ACTTCTACCG CTCAGCTCCA
  TCTTCACTAG TCTTATAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8626716	WI_WGS_2_167965369	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6221021					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166838556 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12728	CpG island 12728	15 bp distal
Rr40642	regulatory region 40642	845 bp proximal
Rr40643	regulatory region 40643	1845 bp proximal
Rr56101	regulatory region 56101	within coordinates
Rr397498	regulatory region 397498	71 bp downstream
Stau1	staufen double-stranded RNA binding protein 1	337 bp upstream
Tssr27718	transcription start site region 27718	527 bp upstream
Tssr27719	transcription start site region 27719	478 bp upstream
Tssr27720	transcription start site region 27720	416 bp upstream
Tssr27721	transcription start site region 27721	380 bp upstream
Tssr27722	transcription start site region 27722	353 bp upstream