rs6221463 SNP Detail

Summary

• ID
  rs6221463
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:14065169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         gatggcgacc
  gctgctgctg tggcttaggc cgcctcccca gccgggtggg cacctgtcct ccggtccgga
  aggtggccgg ctgtccccgg cccacacagg gtgctgcctc agcgcctctg tgcttctgcc
  tgttccagaa gctgtcaggg tctctggcgc accctctcac ctgttcagac taatttccta
  agttcggcgg gtcccggacc aagatggcga ccgctgctgc tgtggcttag gccgcctccc
  M
  agccgggcgg gcacctgtcc tccggtccgg acggtggctg gctgtccccg gcccacacag
  ggtgctgcct cagcgcctct gtgcttctgc ctgttccaga agctgtcagg ttctctggcg
  caccctctca cctgttcaga ctaatttcct aagttcggcg ggtcccggac caagatCAGA
  TCACCCAGTT TTCTAATTTT AATAATTATT CCTAATTATC TCTGTAAAGT TGGACAAAAG
  TGAAAAAGAT                                                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J
ss8627161	WI_WGS_17_12866641	WI	MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J
rs6221463					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:14065169 () rs orientation: forward

Symbol	Name	Function Class
Afdn	afadin, adherens junction formation factor	within coordinates
Tssr142714	transcription start site region 142714	1181 bp upstream
Tssr142715	transcription start site region 142715	1188 bp upstream
Tssr142716	transcription start site region 142716	1246 bp upstream
Tssr142717	transcription start site region 142717	1265 bp upstream
Tssr142718	transcription start site region 142718	1284 bp upstream
Tssr142719	transcription start site region 142719	1850 bp upstream