rs6221788 SNP Detail

Summary

• ID
  rs6221788
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110682640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGGCGGGC CGGCGCGCTG
  CGGGACTCTT GCGTAGCGCC GGGAGCCCAG TGAGTGTGCG CCGCCGGGCC GCCTGGTCTT
  CCTGGGCCGG CGCTTTGTTC CGGAGTCCCA GCCTCATGCT TGCATAGAAG AACCTTTTCC
  TCGCCTCTCC TCCCTGACCC GCCCGGGCCT GGCGTCCTGA GGGCTCGGCG TGGCCTTGCG
  K
  CCTGGCCTCG GTTTAGCGTC TGGGAGCTTT GCTGAAGAGA GGGACGTGTG CCCATCGATA
  GGAATGCGTT CTGTTTGTTG GTCCTCCATC TGCAGAGTAA CGAGAAAAGG ATCAAAGGAA
  GGGCTTTGTA TCCCAGGCTA GAGGCAGCTT TAACTCAAAT GCTCGGCCTG CTGTCACCGA
  GCTTGACCCA GACAGTATAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8627488	WI_WGS_7_100676198	WI	MOUSE	f	SNP	G	T
ss322401274	CHEV_7_118226947	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6221788					SNP	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110682640 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19582	CpG island 19582	within coordinates
Eif4g2	eukaryotic translation initiation factor 4, gamma 2	403 bp upstream
Gm57201	predicted gene, 57201	within coordinates
Rr381309	regulatory region 381309	within coordinates
Rr653396	regulatory region 653396	858 bp distal
Rr653397	regulatory region 653397	427 bp distal
Rr653398	regulatory region 653398	within coordinates
Rr653399	regulatory region 653399	1183 bp proximal
Rr653400	regulatory region 653400	1774 bp proximal
Tssr68539	transcription start site region 68539	228 bp downstream
Tssr68540	transcription start site region 68540	206 bp downstream
Tssr68541	transcription start site region 68541	89 bp downstream
Tssr74297	transcription start site region 74297	1796 bp upstream
Tssr74298	transcription start site region 74298	1378 bp upstream
Tssr74299	transcription start site region 74299	1182 bp upstream
Tssr74300	transcription start site region 74300	927 bp upstream
Tssr74301	transcription start site region 74301	893 bp upstream
Tssr74302	transcription start site region 74302	802 bp upstream
Tssr74303	transcription start site region 74303	396 bp upstream