rs6221890 SNP Detail

Summary

• ID
  rs6221890
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:24686437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTCCCTTC TAGTCTGGGT
  TTTCTATTCT GGAGACTCTG AAAGTAGGGA AGTGGCCTGA AGCAAGGAGG GGGGGTCAGG
  ACTTGGAGCT CTAAGGGGAC CATGCGATGC ATAGTGACTT TCTGGCTCCT CCCCCGCCCC
  CCCCCCACAC GGAACCATCT ATCTGCCTTG CAGACGCAGA CTGGGCTAAG GACTTCCCAC
  R
  GCCTTGTGGA GGGAGTCCTG TTGGCCTTGC TCAGTCTAAA TAATTCGAAT TCTCCAAATT
  CGCGGGGTAA TCCGCTTCAC TCTCAACCAT GTAAACTCTA GAGGACACAC ACACTCAAGC
  TATACTTGTA AATATTTGCT CTCCTTTCCA GCCAGTTGAT CTGGCGATTA GGAACCTCTT
  GGTAGGTCTT AAGGGGGTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8627590	WI_WGS_9_24863262	WI	MOUSE	f	SNP							A		G
ss50654651	NES14025689	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		G		A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6221890					SNP	A	A	A	A	A	A	A	G	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50654651	NES14025689	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:24686437 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21501	CpG island 21501	397 bp distal
Gm29824	predicted gene, 29824	583 bp upstream
Rr675417	regulatory region 675417	348 bp distal
Rr675418	regulatory region 675418	140 bp proximal
Rr675419	regulatory region 675419	641 bp proximal
Rr675420	regulatory region 675420	1091 bp proximal
Rr675421	regulatory region 675421	1849 bp proximal
Tbx20	T-box 20	857 bp upstream
Tssr88515	transcription start site region 88515	1959 bp upstream
Tssr88516	transcription start site region 88516	850 bp upstream