rs6221936 SNP Detail

Summary

• ID
  rs6221936
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:20952268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAAAACTA AATATGTCCC
  TTACTAGACA GCAGGGAAAT ATTTGAGGAC AAGGGAGAGA GTCAGTTAAA AGACTGTGTC
  TTCAAGTGGA TGTCTAAGAG AAAATTTTAA TTCAGTCTTT ATGAGGAAAG CATTGGTTAA
  ATTATCTCTG ACTCAATATG CTGGCTCAGC TGTTTGCCTC TTAGTGGGAG GTTGATGGTT
  W
  AGCCCACCTG CGCAGCACAA TTGAGACTGT TGTTTCAGTG GATGCTCTTC TAAAAGGAAT
  TTATTAAATT GTGAAACACT TTTTTTTTCA CTTTCAGGTT TTATCTTTAT TTCTTTTTTT
  TATATTTTTT ATTACATATT TTCCTCAATT ACATTTCCAA TGCTATCCCA AAAGTCCCCC
  ACACCCTCCC CCCACCACTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8627636	WI_WGS_10_20965736	WI	MOUSE	f	SNP							A		T
ss52171213	NES15228573	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		A		A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6221936					SNP	A	A	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52171213	NES15228573	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:20952268 () rs orientation: forward

Symbol	Name	Function Class
Ahi1	Abelson helper integration site 1	within coordinates
Rr214063	regulatory region 214063	733 bp proximal
Rr218805	regulatory region 218805	668 bp distal
Rr226913	regulatory region 226913	within coordinates