rs6222040 SNP Detail

Summary

• ID
  rs6222040
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129470343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGG GGGCTGGAGA AAAAAAGCCC
  K
  TTGCTGCTCA CAGAGGACCT GAGTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8627740	WI_WGS_4_127079859	WI	MOUSE	f	SNP			G	T
ss147442864	ENSMUSSNP1340568	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T			T
ss321313993	CHEV_4_129253794	CHEVERUD	SCREENING_POP	f	SNP						T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6222040					SNP	T	T	G	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129470343 () rs orientation: forward

Symbol	Name	Function Class
Fam167b	family with sequence similarity 167, member B	265 bp downstream
Gm68905	predicted gene, 68905	1157 bp upstream
Rr367705	regulatory region 367705	1065 bp downstream
Rr600278	regulatory region 600278	1168 bp distal
Rr600279	regulatory region 600279	704 bp distal
Rr600280	regulatory region 600280	591 bp distal
Rr600281	regulatory region 600281	511 bp proximal
Rr600282	regulatory region 600282	748 bp proximal
Rr600283	regulatory region 600283	1989 bp proximal
Tssr39178	transcription start site region 39178	899 bp downstream
Tssr43528	transcription start site region 43528	1349 bp upstream
Tssr43529	transcription start site region 43529	1253 bp upstream
Tssr43530	transcription start site region 43530	1198 bp upstream
Tssr43531	transcription start site region 43531	1149 bp upstream
Tssr43532	transcription start site region 43532	1962 bp downstream
Tssr43533	transcription start site region 43533	1971 bp downstream
Tssr43534	transcription start site region 43534	1985 bp downstream