rs6222149 SNP Detail

Summary

• ID
  rs6222149
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24549522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGTTAGAA GTATGGTAAG
  ACAGATAAGC CTTTGAGACA AAGGCCTGGG GGACGGGGGG GGTGAGTAGA CAGCATACAG
  GAGACACAGA AAGAAGCAAA AATTTGGTTC CAGGATGCTG AAGGATCAGA AGAAAGACAA
  AAGGAGAAGG AGGCAAAAAT GGAAGGGACA GAAGCAGGCA GGCAGGTCTG AGACAAAGGC
  R
  GGGAGGCCTG AGTGTGGGGA GCAAGAGCTG CCAAGAGGAG GGGGGCACAG CAGGCAGGAA
  GGGAGGCAGC AGGGAGGTGG GGACAAAGAG CAAAGACAAT AGCGACAATA GCGGGACCAG
  GAAGAGGAAG AGCTAGATCT CCCCCACCCC CACCACGGCA GGCAGTGGAG GGCAAGGTGT
  GTACGCAGCC AGCACCTGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8627849	WI_WGS_5_22809489	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6222149					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24549522 () rs orientation: forward

Symbol	Name	Function Class
Gm71601	predicted gene, 71601	within coordinates
Kcnh2	potassium voltage-gated channel, subfamily H (eag-related), member 2	within coordinates
Tssr50307	transcription start site region 50307	5 bp downstream
Tssr50308	transcription start site region 50308	26 bp downstream
Tssr50309	transcription start site region 50309	48 bp downstream