rs6222210 SNP Detail

Summary

• ID
  rs6222210
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110682651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGCGCTGC GGGACTCTTG
  CGTAGCGCCG GGAGCCCAGT GAGTGTGCGC CGCCGGGCCG CCTGGTCTTC CTGGGCCGGC
  GCTTTGTTCC GGAGTCCCAG CCTCATGCTT GCATAGAAGA ACCTTTTCCT CGCCTCTCCT
  CCCTGACCCG CCCGGGCCTG GCGTCCTGAG GGCTCGGCGT GGCCTTGCGG CCTGGCCTCG
  R
  TTTAGCGTCT GGGAGCTTTG CTGAAGAGAG GGACGTGTGC CCATCGATAG GAATGCGTTC
  TGTTTGTTGG TCCTCCATCT GCAGAGTAAC GAGAAAAGGA TCAAAGGAAG GGCTTTGTAT
  CCCAGGCTAG AGGCAGCTTT AACTCAAATG CTCGGCCTGC TGTCACCGAG CTTGACCCAG
  ACAGTATACT AGGCTGGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8627910	WI_WGS_7_100676209	WI	MOUSE	f	SNP	G	A
ss322401275	CHEV_7_118226958	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6222210					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110682651 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19582	CpG island 19582	within coordinates
Eif4g2	eukaryotic translation initiation factor 4, gamma 2	414 bp upstream
Gm57201	predicted gene, 57201	within coordinates
Rr381309	regulatory region 381309	within coordinates
Rr653396	regulatory region 653396	869 bp distal
Rr653397	regulatory region 653397	438 bp distal
Rr653398	regulatory region 653398	within coordinates
Rr653399	regulatory region 653399	1172 bp proximal
Rr653400	regulatory region 653400	1763 bp proximal
Tssr68539	transcription start site region 68539	239 bp downstream
Tssr68540	transcription start site region 68540	217 bp downstream
Tssr68541	transcription start site region 68541	100 bp downstream
Tssr74297	transcription start site region 74297	1807 bp upstream
Tssr74298	transcription start site region 74298	1389 bp upstream
Tssr74299	transcription start site region 74299	1193 bp upstream
Tssr74300	transcription start site region 74300	938 bp upstream
Tssr74301	transcription start site region 74301	904 bp upstream
Tssr74302	transcription start site region 74302	813 bp upstream
Tssr74303	transcription start site region 74303	407 bp upstream