rs6222725 SNP Detail

Summary

• ID
  rs6222725
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24549626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GGGGGGGGTG
  AGTAGACAGC ATACAGGAGA CACAGAAAGA AGCAAAAATT TGGTTCCAGG ATGCTGAAGG
  ATCAGAAGAA AGACAAAAGG AGAAGGAGGC AAAAATGGAA GGGACAGAAG CAGGCAGGCA
  GGTCTGAGAC AAAGGCNGGG AGGCCTGAGT GTGGGGAGCA AGAGCTGCCA AGAGGAGGGG
  GGCACAGCAG GCAGGAAGGG AGGCAGCAGG GAGGTGGGGA CAAAGAGCAA AGACAATAGC
  K
  ACAATAGCGG GACCAGGAAG AGGAAGAGCT AGATCTCCCC CACCCCCACC ACGGCAGGCA
  GTGGAGGGCA AGGTGTGTAC GCAGCCAGCA CCTGCTGTCT GCNGTCCCTT CACAGAAATG
  TCGCATCCTG CCAGGCCTGC ACTACAGGGT TCTGCTGTTC CCAGTTCCAT TCTGGTCCTC
  GGTCTGTCTT AAGGGGCATC ATCACACGGC CAGTGAACTG GGCACACTCT GTCTCCTCCT
  CCACCCACAC                                                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8628426	WI_WGS_5_22809593	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6222725					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24549626 () rs orientation: forward

Symbol	Name	Function Class
Gm71601	predicted gene, 71601	41 bp upstream
Kcnh2	potassium voltage-gated channel, subfamily H (eag-related), member 2	within coordinates
Tssr50307	transcription start site region 50307	84 bp upstream
Tssr50308	transcription start site region 50308	61 bp upstream
Tssr50309	transcription start site region 50309	42 bp upstream