rs6222957 SNP Detail

Summary

• ID
  rs6222957
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:41494349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAGATATA CCTGAGGATC
  TGGGCAAAAC AGAGGCATGA GAAGGAGTTG ATCTTAGAAG GCTTCACCAC CAGAGCCTGG
  ATCCCCACCC CACAAGGGAC ATGACTGAAC TCTGGACATC TCTCCTAGAC TGCTGTGTGG
  GTTGGACAAG ATCAGACACT TGAGTCTGCG GGTCATCCTT CAGAGATTCT AACAGTGGTA
  Y
  GTGGCTGATG AGGTCTCATG TGGAGGCTGT TGCTGGAGTC TTTGAGTCCA GGAATCCTAA
  CAAACCTGAC TCCAAAACAG AGAAGTGAAA AACAGGAAAG GAACTTTAAT CAGCAGAACT
  ATACCAGGAA GAGAAGGGGG ATGATGCTGT CAGCCCTGGC CTTGGAGGCC CTCATAGGAG
  TTCCCAGCTT ACACAGGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8628659	WI_WGS_4_41261006	WI	MOUSE	f	SNP							T		C
ss37937814	NES09456861	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T		T		T	T	C		T	C	T	C		C
ss321092814	CHEV_4_41441382	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6222957					SNP	T	T	C	T	T	T	T	T	C	T	T	C	C	T	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37937814	NES09456861	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:41494349 () rs orientation: forward

Symbol	Name	Function Class
Myorg	myogenesis regulating glycosidase (putative)	1255 bp downstream
Rr590654	regulatory region 590654	within coordinates
Rr590655	regulatory region 590655	1383 bp proximal
Tssr41339	transcription start site region 41339	1970 bp downstream