rs6222974 SNP Detail

Summary

• ID
  rs6222974
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:36529648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATGGGAA GAACTCAGAG
  CAGCTTGAAA ACTGATACTG GTACTCTATA TTGTTGACAC AGATGCACAC ACCTAATGCT
  CTGAATGCCT GCATATCCTG CTTTCGGTAG TTCTACAGAT TCTGGTATCC CACAGATCCA
  TTGTAGCTCC ATGGGAACCA CCATCTGGAT TTGATTCATA GGAAGACAGC ATTGGGGAAA
  W
  ACACTCAAGA AAGTTTAAAA GAAATAATAG TAATAAAAAA AACCAATGAA GTCATGTTGA
  GTATTCTACT GGCTGGTTAC AATTACACAC TAATTCCTTA ATTTAATATG GTTTTGTGAA
  ATCCAGGCAT AGTAATCAGG ACCTGGGTTT GAAAATTTTT CTGGTGCTTC ATTGTTTCTC
  TCTAACATAC ATTCAATTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8628676	WI_WGS_2_37068190	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6222974					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:36529648 () rs orientation: forward

Symbol	Name	Function Class
Or1j16	olfactory receptor family 1 subfamily J member 16	405 bp upstream