rs6223038 SNP Detail

Summary

• ID
  rs6223038
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:20952450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TGGTTAAATT
  ATCTCTGACT CAATATGCTG GCTCAGCTGT TTGCCTCTTA GTGGGAGGTT GATGGTTNAG
  CCCACCTGCG CAGCACAATT GAGACTGTTG TTTCAGTGGA TGCTCTTCTA AAAGGAATTT
  ATTAAATTGT GAAACACTTT TTTTTTCACT TTCAGGTTTT ATCTTTATTT Ctttttttta
  tattttttat tacatatttt cctcaattac atttccaatg ctatccccaa aagtccccca
  Y
  accctccccc caccacttcc ctacccaccc attcccatgt ttttggccct ggcgttcccc
  tgtactgggg catatacagt ttgcgtgtcc aatgggcctc tctttgcagt gatggccgac
  taagccatct tttgataAAA TTGTGAAACA CTTAAATAAT CAATTGTCAG GTACTCATTA
  TTCATTGGAC ACAGTTTTTG TCATGTTTTT GGCATATTGC ATATGAGTGG AAAGATGCGA
  TTGATAAATC                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8628740	WI_WGS_10_20965919	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6223038					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:20952450 () rs orientation: forward

Symbol	Name	Function Class
Ahi1	Abelson helper integration site 1	within coordinates
Rr214063	regulatory region 214063	551 bp proximal
Rr218805	regulatory region 218805	850 bp distal
Rr226913	regulatory region 226913	within coordinates