rs6223050 SNP Detail

Summary

• ID
  rs6223050
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:24686659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GACGCAGACT
  GGGCTAAGGA CTTCCCACNG CCTTGTGGAG GGAGTCCTGT TGGCCTTGCT CAGTCTAAAT
  AATTCGAATT CTCCAAATTC GCGGGGTAAT CCGCTTCACT CTCAACCNTG TAAACTCTAG
  AGGACACACA CACTCAAGCT ATACTTGTAA ATATTTGCTC TCCTTTCCAG CCAGTTGATC
  TGGCGATTAG GAACCTCTTG GTAGGTCTTA AGGGGGTAGG GGAGGGGTGG GGTGAAGAAC
  R
  TAAAAAGAAA GACATNCCCT GTCTCCCATT GCATCCTCTT CACAGCTCCC GAAACATAGT
  TATGGGCGAA ATCNAGAGCC AGAATAACTA TGAAGAACAT CCCGTGTAAA CAGAATGTTG
  GCATCTGAGG AAGTTCTGAT TTAGACTGGC CTGGCCATCC TGTCTATGTT TGCTCGTTTC
  ANCATTTGGG TTGTAATGTG TCAATGTTGA GGGAAATTAG AAATTAGTAA AACTGCAGAC
  TTTTCATACT                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8628752	WI_WGS_9_24863484	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6223050					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:24686659 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21501	CpG island 21501	619 bp distal
Cpgi21502	CpG island 21502	1961 bp proximal
Gm29824	predicted gene, 29824	361 bp upstream
Rr675417	regulatory region 675417	570 bp distal
Rr675418	regulatory region 675418	within coordinates
Rr675419	regulatory region 675419	419 bp proximal
Rr675420	regulatory region 675420	869 bp proximal
Rr675421	regulatory region 675421	1627 bp proximal
Tbx20	T-box 20	1079 bp upstream
Tssr88516	transcription start site region 88516	1072 bp upstream