rs6223306 SNP Detail

Summary

• ID
  rs6223306
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24549729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGAGTGTG GGGAGCAAGA
  GCTGCCAAGA GGAGGGGGGC ACAGCAGGCA GGAAGGGAGG CAGCAGGGAG GTGGGGACAA
  AGAGCAAAGA CAATAGCGAC AATAGCGGGA CCAGGAAGAG GAAGAGCTAG ATCTCCCCCA
  CCCCCACCAC GGCAGGCAGT GGAGGGCAAG GTGTGTACGC AGCCAGCACC TGCTGTCTGC
  R
  GTCCCTTCAC AGAAATGTCG CATCCTGCCA GGCCTGCACT ACAGGGTTCT GCTGTTCCCA
  GTTCCATTCT GGTCCTCGGT CTGTCTTAAG GGGCATCATC ACACGGCCAG TGAACTGGGC
  ACACTCTGTC TCCTCCTCCA CCCACACTCC CCCAGTCTAG CTTTCCTTCC TCCCAGCAGC
  CCCGGCAACT AAATAATGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8629008	WI_WGS_5_22809696	WI	MOUSE	f	SNP							G		A
ss47616432	NES10290922	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G		G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6223306					SNP	G	G	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47616432	NES10290922	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24549729 () rs orientation: forward

Symbol	Name	Function Class
Gm71601	predicted gene, 71601	144 bp upstream
Kcnh2	potassium voltage-gated channel, subfamily H (eag-related), member 2	within coordinates
Tssr50307	transcription start site region 50307	187 bp upstream
Tssr50308	transcription start site region 50308	164 bp upstream
Tssr50309	transcription start site region 50309	145 bp upstream