rs6223422 SNP Detail

Summary

• ID
  rs6223422
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:36529678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         ATAGATTGAT
  AAACAGTGCT ATTATGGGAA GAACTCANAG CAGCTTGAAA ACTGATACTG GTACTCTATA
  TTGTTGACAC AGATGCACAC ACCTAATGCT CTGAATGCCT GCATATCCTG CTTTCGGTAG
  TTCTACAGAT TCTGGTATCC CACAGATCCA TTGTAGCTCC ATGGGAACCA CCATCTGGAT
  TTGATTCATA GGAAGACAGC ATTGGGGAAA NACACTCAAG AAAGTTTAAA AGAAATAATA
  R
  TAATAAAAAA AACCAATGAA GTCATGTTGA GTATTCTACT GGCTGGTTAC AATTACACAC
  TAATTCCTTA ATTTAATATG GTTTTGTGAA ATCCAGGCAT AGTAATCAGG ACCTGGGTTT
  GAAAATTTTT CTGGTGCTTC ATTGTTTCTC TCTAACATAC ATTCAATTGT TTTCAAGTCA
  TATCCAGTTC TAACCAGCAG CATCCCATTA CTCTGACAAA ATCTCTATAT TAAAATTAAA
  ATTGATGTAC                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8629124	WI_WGS_2_37068220	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6223422					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:36529678 () rs orientation: forward

Symbol	Name	Function Class
Or1j16	olfactory receptor family 1 subfamily J member 16	375 bp upstream