rs6223530 SNP Detail

Summary

• ID
  rs6223530
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:59731932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         tcaggacctc
  tggaagagca attggtgctc ttaaacactg agtcatctct caagcccATA TATCCtctta
  ttttttaaaa agatctattt atgtgtctac ttgagtgtac agcacccgta tgccagtgca
  cttctggacc acacttacag gtagctgtgc tacctccagt gggtcctggg aatggaactt
  aagttcngtg gaagaacagg aagcactctt aacctatgat ccatctctac agccGCCCCC
  W
  CCATGAATCT TTATCAAATT AGTGTTTGTC ACGCCCTTAT ACACAATATT GAACAAATCA
  GATGAACCCT GTTCACATTT TTCTAGGTTT CTTCTGGAGT CTCAAAAGGT CATTAAACCA
  GTTTGTGCGA TTTCTTTACT CATTCTCCTC TTCNAAGGAG AACTAACTAC ATGCCTTACG
  TTTTTAGGGC AATTTAAACG AAAACAAAGT TCTTGTCCTC AGGAAATACA CTCCATGGGG
  GAAACAATTT                                                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8629232	WI_WGS_13_59132247	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6223530					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:59731932 () rs orientation: forward

Symbol	Name	Function Class
A230056J06Rik	RIKEN cDNA A230056J06 gene	within coordinates
Cpgi5739	CpG island 5739	919 bp proximal
Naa35	N(alpha)-acetyltransferase 35, NatC auxiliary subunit	1215 bp upstream
Rr369727	regulatory region 369727	216 bp upstream
Rr481226	regulatory region 481226	687 bp proximal
Rr481227	regulatory region 481227	1188 bp proximal
Tssr120097	transcription start site region 120097	1183 bp upstream
Tssr120098	transcription start site region 120098	1230 bp upstream