rs6223591 SNP Detail

Summary

• ID
  rs6223591
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:41494488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTGGACAA GATCAGACAC
  TTGAGTCTGC GGGTCATCCT TCAGAGATTC TAACAGTGGT ATGTGGCTGA TGAGGTCTCA
  TGTGGAGGCT GTTGCTGGAG TCTTTGAGTC CAGGAATCCT AACAAACCTG ACTCCAAAAC
  AGAGAAGTGA AAAACAGGAA AGGAACTTTA ATCAGCAGAA CTATACCAGG AAGAGAAGGG
  K
  GATGATGCTG TCAGCCCTGG CCTTGGAGGC CCTCATAGGA GTTCCCAGCT TACACAGGAC
  TGGGGACAGA GGCTGGAGCA AGAAGCACGT GCTAATCAGC TTTGGCCAAA GTGTGGTCTG
  GTTGATCATT ATCCTAGGAT TGGTCTGGCA GGCCTTGTTC AGTTGCCGGG GGTTAGGGGG
  TAGTTTTGAT CCTTGTCACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8629293	WI_WGS_4_41261145	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6223591					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:41494488 () rs orientation: forward

Symbol	Name	Function Class
Myorg	myogenesis regulating glycosidase (putative)	1116 bp downstream
Rr590654	regulatory region 590654	within coordinates
Rr590655	regulatory region 590655	1244 bp proximal
Tssr41339	transcription start site region 41339	1831 bp downstream