rs6223664 SNP Detail

Summary

• ID
  rs6223664
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:41494530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGATTCTA ACAGTGGTAT
  GTGGCTGATG AGGTCTCATG TGGAGGCTGT TGCTGGAGTC TTTGAGTCCA GGAATCCTAA
  CAAACCTGAC TCCAAAACAG AGAAGTGAAA AACAGGAAAG GAACTTTAAT CAGCAGAACT
  ATACCAGGAA GAGAAGGGGG ATGATGCTGT CAGCCCTGGC CTTGGAGGCC CTCATAGGAG
  Y
  TCCCAGCTTA CACAGGACTG GGGACAGAGG CTGGAGCAAG AAGCACGTGC TAATCAGCTT
  TGGCCAAAGT GTGGTCTGGT TGATCATTAT CCTAGGATTG GTCTGGCAGG CCTTGTTCAG
  TTGCCGGGGG TTAGGGGGTA GTTTTGATCC TTGTCACAGA TGTTTATCCA GGGGCTCTGT
  TGTTCCTGGA ATCCACCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss8629366	WI_WGS_4_41261187	WI	MOUSE	f	SNP						T		C
ss37937813	NES09456862	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T		T		T	C		T	T		C
ss321092815	CHEV_4_41441563	CHEVERUD	SCREENING_POP	f	SNP											C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs6223664					SNP	T	T	T	T	T	T	T	C	T	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37937813	NES09456862	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:41494530 () rs orientation: forward

Symbol	Name	Function Class
Myorg	myogenesis regulating glycosidase (putative)	1074 bp downstream
Rr590654	regulatory region 590654	within coordinates
Rr590655	regulatory region 590655	1202 bp proximal
Tssr41339	transcription start site region 41339	1789 bp downstream