rs6223733 SNP Detail

Summary

• ID
  rs6223733
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:12011425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAGCACCG GAAAAATCAG
  TGATGGTTCT CTGTTAGGTG TCTAAGCCCC GGGGTTGGAG TTTAGTGAAC AACAACATCC
  CTGAGCTACA AAGCTGGGCA TGGTAGGGCA GCATGGTAGT TACAGCATCT TTTCTGCTCC
  TGCACCTTGG TGTGGGACAA AAAAATGGGG TCCTGCATCC ACTTTTGGCT AGGGCTGCTG
  R
  GCGAGGCAGA CTGGGGAAGT TTGACTGCTC GGACCCCAGG AAACTGCCAG GCAGGTATTG
  GACTGTGAGA AGCCACAGGA CCCGCCCCCC CCCCCCCCCC GCTCCGGGGT GGGGAAGGAA
  GGGCGCAGTC TGGGGTCCCC ATGGAACTGC AGGAGTTGGG CTCCAACTCT CACTCAGGCA
  CCACAGATAA CACTGGGCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8629435	WI_WGS_2_12111331	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6223733					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:12011425 () rs orientation: forward

Symbol	Name	Function Class
Rr551865	regulatory region 551865	1985 bp distal
Rr551866	regulatory region 551866	994 bp proximal