rs6224032 SNP Detail

Summary

• ID
  rs6224032
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116678900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTGTATGA GAACCACGCG
  GACGCTGTGC GGGGCGGACC AGGAGGTCAG GGTGGAGCCT GAGACTCCGC CTTTGACACT
  CCCTCCGGTC CAGAACCTGT CTCCCGGAGT ACAGTGGGGA CGAAGGGCAG TTCCTTCACA
  GGGCCTTGGA CCAGGTCACA CCCTTGGGCA ACTAGCCACC CCTTCCGGGG CCCGGGAAGT
  M
  ACAATAGCCA CCTTCACTCT GTGCCAGGCG CTCTCTTCCC GCGACCTTAG AGCCTAAGGA
  CTGCCCGTGT GGGGGAGGAG CCCCAATCCT TTCTCAACAG ACGGAATTTT CTTGGCCTGG
  TACTTTTTTT TTTTTACAAT TCAGAAGTTT GTGTTCAAGA ACGGGCTCTG TTAACGTTTT
  ATTTATTTAT TTTTCTTTAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8629734	WI_WGS_4_114583897	WI	MOUSE	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6224032					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116678900 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14642	CpG island 14642	48 bp distal
Hpdl	4-hydroxyphenylpyruvate dioxygenase-like	195 bp upstream
Rr597993	regulatory region 597993	within coordinates
Tssr42929	transcription start site region 42929	816 bp upstream
Tssr42930	transcription start site region 42930	797 bp upstream
Tssr42931	transcription start site region 42931	216 bp upstream
Tssr42932	transcription start site region 42932	204 bp upstream
Tssr42933	transcription start site region 42933	182 bp upstream