rs6224349 SNP Detail

Summary

• ID
  rs6224349
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:76901824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTCCTCA GCACCCTCAG
  GGGAACAGGG CTGGGGTAGG TTATAGAGGA GAACTGGGGA GAAAGCTTAG TGGGGAGAAA
  GCAGGCCACT CGTATTGAGT GGCTAAGCTG GGATTTATAT CTCTGCCCTG GAGACTTGCT
  GTGGCCGCCT ACCTCCAGGT ACTTGACCGG GATCTTGTGC TTGGTGGCGT GTGATTGGGC
  Y
  AGAGGCTGGA TCTCGGCAGC ATGTTGTCCC TTCTTCTTCA GGATGGTACC CAGGGCTGTG
  AGCACGGTGC AACCATGCTT CTTCAGGTCC TCTGAGCCCT TCATATCTTC CTCTGACTTC
  AAGTTCTTGA ACTTGTCAAA CTTATCCAGG GTCTCAGGGT GAGTCTTAAA CAGACTGTGG
  GACAAGAAGA GATGGAGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8630052	WI_WGS_15_77518061	WI	MOUSE	f	SNP							T		C
ss48053857	NES12082126	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		T		T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6224349					SNP	T	T	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48053857	NES12082126	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76901824 () rs orientation: forward

Symbol	Name	Function Class
Gm49540	predicted gene, 49540	1726 bp downstream
Mb	myoglobin	Coding-Synonymous
Rr504919	regulatory region 504919	1053 bp proximal
Rr504920	regulatory region 504920	1281 bp proximal
Tssr131853	transcription start site region 131853	1837 bp downstream
Tssr131854	transcription start site region 131854	1786 bp downstream
Tssr131855	transcription start site region 131855	1668 bp downstream
Tssr131856	transcription start site region 131856	1588 bp downstream
Tssr131857	transcription start site region 131857	7 bp upstream
Tssr131858	transcription start site region 131858	83 bp upstream
Tssr135064	transcription start site region 135064	1546 bp upstream
Tssr135065	transcription start site region 135065	20 bp downstream