rs6224680 SNP Detail

Summary

• ID
  rs6224680
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:41494658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAGCAGAA CTATACCAGG
  AAGAGAAGGG GGATGATGCT GTCAGCCCTG GCCTTGGAGG CCCTCATAGG AGTTCCCAGC
  TTACACAGGA CTGGGGACAG AGGCTGGAGC AAGAAGCACG TGCTAATCAG CTTTGGCCAA
  AGTGTGGTCT GGTTGATCAT TATCCTAGGA TTGGTCTGGC AGGCCTTGTT CAGTTGCCGG
  R
  GGTTAGGGGG TAGTTTTGAT CCTTGTCACA GATGTTTATC CAGGGGCTCT GTTGTTCCTG
  GAATCCACCA GACTGTAATG ACTCCGTGCA AAGGGAACAG GTGCAAACTG GAGTCATCAT
  ACCAAGCTTT TGTTCTGGTT TTTAGTTAAC CCATTGGGCA CCCGGAGGGC CAAGAGAAGA
  GTCAATGCTT TTAGCAAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8630384	WI_WGS_4_41261315	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6224680					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:41494658 () rs orientation: forward

Symbol	Name	Function Class
Myorg	myogenesis regulating glycosidase (putative)	946 bp downstream
Rr590654	regulatory region 590654	within coordinates
Rr590655	regulatory region 590655	1074 bp proximal
Tssr41339	transcription start site region 41339	1661 bp downstream