rs6224963 SNP Detail

Summary

• ID
  rs6224963
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:76901944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGCCCTG GAGACTTGCT
  GTGGCCGCCT ACCTCCAGGT ACTTGACCGG GATCTTGTGC TTGGTGGCGT GTGATTGGGC
  TAGAGGCTGG ATCTCGGCAG CATGTTGTCC CTTCTTCTTC AGGATGGTAC CCAGGGCTGT
  GAGCACGGTG CAACCATGCT TCTTCAGGTC CTCTGAGCCC TTCATATCTT CCTCTGACTT
  Y
  AAGTTCTTGA ACTTGTCAAA CTTATCCAGG GTCTCAGGGT GAGTCTTAAA CAGACTGTGG
  GACAAGAAGA GATGGAGTGA GACCCGTGGA TCTCAGGGCT AGTGTGCAGA GAAGGCAGGC
  AGCCATTGGA TCTATATGAC TCAGAAGTAC CCTCTATTCC TCAAGACATC TGTGTCAGGG
  ATGCCTCTAT TGCTTCCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8630668	WI_WGS_15_77518181	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6224963					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76901944 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm49540	predicted gene, 49540			1846 bp downstream
Mb	myoglobin			Coding-Synonymous
				mRNA-UTR
Rr504919	regulatory region 504919			933 bp proximal
Rr504920	regulatory region 504920			1161 bp proximal
Tssr131853	transcription start site region 131853			1957 bp downstream
Tssr131854	transcription start site region 131854			1906 bp downstream
Tssr131855	transcription start site region 131855			1788 bp downstream
Tssr131856	transcription start site region 131856			1708 bp downstream
Tssr131857	transcription start site region 131857			87 bp downstream
Tssr131858	transcription start site region 131858			12 bp downstream
Tssr135064	transcription start site region 135064			1666 bp upstream
Tssr135065	transcription start site region 135065			89 bp upstream