rs6224977 SNP Detail

Summary

• ID
  rs6224977
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:12011683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         AGACTGggga
  agtttgactg ctcggacccc aggaaactgc caggcaggta ttggactgtg agaagccaca
  ggacccgccc cccccccccc cccgctccgg ggtggggaag gaagggcnca gtctggggtc
  cccatggaac tgcaggagtt gggctcCAAC TCTCACTCAG GCACCACAGA TAACACTGGG
  CACCTCGAGG ACCCAGGAGG CGTGGCCAAA CACCTTCTGT CCTTTAAGGC CACTAGGGTC
  Y
  CGCGGGACCA GGCTACTTGT GCACAGCTCA CCACCCCACA CCATGGTATA GTAAATTCTC
  CCATGTGTAA ACACATTGAG TGAATGGGGA GAATTGTTAT TTTTTATTTC AAAAATTATC
  ATCTCACTAG TTTTATTGTT CCTATTTAAG TTCAACAGCA TATCTTCTAA AAATAAAATC
  TAAACATTAA AACGAAAGAA CTGGATGACT TTATAATAAC CTTTAAGAAG ACACAGCATG
  CCGGGTGTAG                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8630683	WI_WGS_2_12111589	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6224977					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:12011683 () rs orientation: forward

Symbol	Name	Function Class
Rr551866	regulatory region 551866	736 bp proximal