rs6225189 SNP Detail

Summary

• ID
  rs6225189
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:24686991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GAATAACTAT
  GAAGAACATC CCGTGTAAAC AGAATGTTGG CATCTGAGGA AGTTCTGATT TAGACTGGCC
  TGGCCATCCT GTCTATGTTT GCTCGTTTCA NCATTTGGGT TGTAATGTGT CAATGTTGAG
  GGAAATTAGA AATTAGTAAA ACTGCAGACT TTTCATACTA GAAGGTTTTT TTTTTTTTTC
  CTTGTCTGGA CCAACTACTT TGAAAAGATC GAAGGTGACA AGTTGGCAGA GCAGTGTCTC
  K
  TTTTTGCAAG TCTCCCCCAT CCTCCAACCA TGTCCCAGTC ATTCCCCTCT CCTCCCCACA
  GGTCAGGAAT CTCTGGACTC NTAAGTGTgt gcaagtcagt agagagtatc agatctcctg
  gagctgggat tacaggctgt tgtgagccct ctgtgtgggt gctagggagt gaagtcctcc
  agatctctaa agaggagcaa atgcttttag ctgctcatcc atctctccTG GCCTTAGATA
  CAATGTCTCA                                                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8630895	WI_WGS_9_24863816	WI	MOUSE	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6225189					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:24686991 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21501	CpG island 21501	951 bp distal
Cpgi21502	CpG island 21502	1629 bp proximal
Gm29824	predicted gene, 29824	29 bp upstream
Rr675417	regulatory region 675417	902 bp distal
Rr675418	regulatory region 675418	within coordinates
Rr675419	regulatory region 675419	87 bp proximal
Rr675420	regulatory region 675420	537 bp proximal
Rr675421	regulatory region 675421	1295 bp proximal
Tbx20	T-box 20	1411 bp upstream
Tssr88516	transcription start site region 88516	1404 bp upstream