rs6225257 SNP Detail

Summary

• ID
  rs6225257
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:59732253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGTGCGA TTTCTTTACT
  CATTCTCCTC TTCTAAGGAG AACTAACTAC ATGCCTTACG TTTTTAGGGC AATTTAAACG
  AAAACAAAGT TCTTGTCCTC AGGAAATACA CTCCATGGGG GAAACAATTT TTAAAAAATT
  TAAACAATCA ACATGAAGTC CGAGGATACA GCCCAATGAC AGATTGCTTG TGTACTCTTA
  Y
  TGAGTGTTAG CTCTCAACCC TGGGACAAAT GCTAACGGAG ATACCTATTT AACATGTATA
  GGCGGAACGG AACGTTCTCC TAGAATCCCA GTCTCTACCT GGTAGAAGCT ATGGCTGGCA
  TACCCGGCCC CCTTACTCCA GCACAGGGGC TGGGCTGCAC TGCCCCCCAG CTGCCTTCGC
  AGACATTTTG GTTACCTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8630963	WI_WGS_13_59132568	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6225257					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:59732253 () rs orientation: forward

Symbol	Name	Function Class
A230056J06Rik	RIKEN cDNA A230056J06 gene	within coordinates
Cpgi5739	CpG island 5739	598 bp proximal
Naa35	N(alpha)-acetyltransferase 35, NatC auxiliary subunit	894 bp upstream
Rr369727	regulatory region 369727	within coordinates
Rr481226	regulatory region 481226	366 bp proximal
Rr481227	regulatory region 481227	867 bp proximal
Tssr120097	transcription start site region 120097	862 bp upstream
Tssr120098	transcription start site region 120098	909 bp upstream