rs6225342 SNP Detail

Summary

• ID
  rs6225342
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:81974612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGCTGTG TAGCAGTGTG
  TTGCCATGCG GTATCTTGGT GACCCTCCAT CACTGAGCAT GCTAGTCTAA CCCAGAAGAC
  ATGACTCTCT TTCTTTGCCA TATACCAGCT CTCAGCAGCC CCTGGGGTTG GAAGCTTGTT
  TGCCCTGTTG TCCTGGAGCT TCCTGCTGAG TCTACTTATA TGAAAGAGTC TAAAATCCCA
  W
  AGGGAAAAAC CCACCATTTC TCTGGAAACA TATGACATTC AATGTGGGGC CCCCAAACTT
  TCTGGCATCA GTAACTTTCA GACATACCCA TTTCTTGTCT CAATTTCTCA GCATTTTCAG
  TGAAAGAGAA TGGGGTCTCA ATGTTTCTCC ACAGCTGGGA TGCTTCCTGC ATGAAATTCT
  GGCATCCTGG ATGCTGAGAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8631048	WI_WGS_13_78921288	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6225342					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:81974612 () rs orientation: forward

Symbol	Name	Function Class
Gm32836	predicted gene, 32836	within coordinates
Rr483181	regulatory region 483181	1609 bp proximal