rs6225456 SNP Detail

Summary

• ID
  rs6225456
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:42298050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTACAGCTA AGCAGGACCT
  CTTGTAGATT TCCCTGTTTT CCCCAACACT GGCTTTGCCA CTAGAAAAGG GAGAGGTAGT
  CTACGTTATT TGCTTATCAT AACGGATTTC TTATCATTGT TTGAGGTTGC TCCCAAAGGA
  GTGAGGGCTT CTTGGGTTTC TTTTAGCACT CGGGTTCTGA TTGCCCTGAT GTCTGCTGGT
  R
  ACACTGGACT CAAACCCTGT TGGTCCATAG CGGCCAAATC TATGCCAGGA CGCTATAGAC
  CTTCCCACCT GAATAGCCCA TTCAGGTAGT TATGCCCATC TCCAATTTCC TCTACCAAAG
  GGGGAAAAAA AGAAAAAGAA AAAGAAAAAG AAAAAAGTCC AGTTCTACAA AAATATTGCC
  GTCCTATCTC CCTGAGGGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8631162	WI_WGS_1_42774061	WI	MOUSE	f	SNP							A		G
ss47278598	NES11102262	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		G		A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6225456					SNP	A	A	A	A	A	A	A	G	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47278598	NES11102262	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:42298050 () rs orientation: forward

Symbol	Name	Function Class
Gm28175	predicted gene 28175	within coordinates
Gm70195	predicted gene, 70195	within coordinates
Rr406833	regulatory region 406833	347 bp distal
Rr410203	regulatory region 410203	within coordinates
Rr410204	regulatory region 410204	405 bp proximal
Rr410205	regulatory region 410205	926 bp proximal
Tssr6506	transcription start site region 6506	913 bp upstream