rs6225886 SNP Detail

Summary

• ID
  rs6225886
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:81974720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCAGCAG CCCCTGGGGT
  TGGAAGCTTG TTTGCCCTGT TGTCCTGGAG CTTCCTGCTG AGTCTACTTA TATGAAAGAG
  TCTAAAATCC CAAAGGGAAA AACCCACCAT TTCTCTGGAA ACATATGACA TTCAATGTGG
  GGCCCCCAAA CTTTCTGGCA TCAGTAACTT TCAGACATAC CCATTTCTTG TCTCAATTTC
  Y
  CAGCATTTTC AGTGAAAGAG AATGGGGTCT CAATGTTTCT CCACAGCTGG GATGCTTCCT
  GCATGAAATT CTGGCATCCT GGATGCTGAG ACAGAGGATC GAGAGTTGAA GCCTAGTGTG
  AGTGACATAG TTCGACTTCC TTGCAAAACA ACAAAACAAA TCAGACTCTC TCTCCATCTC
  TAATATCATC CTTCTCCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8631593	WI_WGS_13_78921396	WI	MOUSE	f	SNP							T		C
ss52668816	NES15483121	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		T		T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6225886					SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52668816	NES15483121	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:81974720 () rs orientation: forward

Symbol	Name	Function Class
Gm32836	predicted gene, 32836	within coordinates
Rr483181	regulatory region 483181	1501 bp proximal