rs6226304 SNP Detail

Summary

• ID
  rs6226304
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:129324460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CCTGGTCTCC
  AAAAATGAAA ATACACAGGA GGAGTTCCCC GTCTCAGCCT CAGAGGTTCT GGGACTCTGA
  ACTCAGGTCC TCATGCCAAG CCATTTTCAC AATgtggtgg caatacctct ttcattccag
  cacaagggag gcaggggcaa ggagagctat gagttggagg ccacactgat tgatctattg
  ctctactgtg caatttccag gatggccagg gatacacaga gaatcaaaaa acaaaaacaa
  W
  TAAAAAACCC AAACAAAAAC AAAAACAAAT GACATTAAAA ACCcagggtg tcattctatc
  tccttggctg acctggatct tgttactaga ccaggctaat ctcaaactca caaaaatcca
  catgcttctg actccagagt gtattaggat taaggacata cccaccCCCC AATTAAGGAC
  ATACCCCACC CTTTTAAGAC TTGGGGGGCA GGGGAAGCAA GGATGTCACT GTGAAATTCA
  GACTCACCTC                                                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8632011	WI_WGS_3_130030733	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6226304					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129324460 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13814	CpG island 13814	1194 bp proximal
Elovl6	ELOVL fatty acid elongase 6	1575 bp upstream
Gm35986	predicted gene, 35986	within coordinates
Rr375731	regulatory region 375731	545 bp downstream
Rr585018	regulatory region 585018	882 bp proximal
Rr585019	regulatory region 585019	1351 bp proximal
Rr585020	regulatory region 585020	1494 bp proximal
Rr585021	regulatory region 585021	1514 bp proximal
Rr585022	regulatory region 585022	1586 bp proximal
Tssr31642	transcription start site region 31642	1586 bp upstream
Tssr31643	transcription start site region 31643	1642 bp upstream
Tssr31644	transcription start site region 31644	1825 bp upstream
Tssr35616	transcription start site region 35616	1185 bp downstream