rs6226471 SNP Detail

Summary

• ID
  rs6226471
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:100181921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         AAGCTAAGAC
  TCACAGATGC GTTGTTTCCA AGAATCTCCT CCACCTCTAA GGGTGTACCA TGTCCTCACA
  TCCTTAATCA AGGACCGCTG CCACCTCTTA CTGAAGGGGA CAAACAAGGG GAGAGGAGAG
  ATTGTGGCAT TTACTAAGAA CTCATAACGT GGCTTCACAC ATATTTATTT GCTGTCTTCA
  CCCCAGATCC AGGCTTACAT AGTCAAAGTG ATACAATTAT TACCATTTTT CCCATTGATC
  Y
  ATCTTCCAAA GTAGGACACC AAGTCACAGG GCTTAGGAGC GCGGAGCCTC TAATCCAACC
  CGGTCTGCTT CCAAAGCCCA CGCTCTCAAT AACACCCCAC GTGCCTGTCT GAGGCTGAGC
  TAAACAGTTA AGTTGGGGAA AATAAAAGCG GTCAGGCTTG ATTCTGCTAT CTTGAACACA
  AATATCTTGG CGTCACGGAC ACACAAGCAC CATCTGCCTG TAGGTGTGCC GATGGTGGGA
  GCCACTCTAT                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8632179	WI_WGS_9_100830603	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6226471					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:100181921 () rs orientation: forward

Symbol	Name	Function Class
Gm28167	predicted gene 28167	within coordinates